PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145771.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 267aa    MW: 29253.9 Da    PI: 8.6932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034102124123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ Cgk F++   L  H  +H
  XP_009145771.1 102 HKCSVCGKAFPSYQALGGHKASH 124
                     79**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.21E-8102124No hitNo description
PfamPF139122.2E-13102125IPR007087Zinc finger, C2H2
SMARTSM003550.011102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827102124IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SuperFamilySSF576675.21E-8154181No hitNo description
PfamPF139128.8E-14159183IPR007087Zinc finger, C2H2
SMARTSM003550.17159181IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099159181IPR007087Zinc finger, C2H2
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MALEAMNCPT NSSSFTARKD RNEPTDDLTN DTVFMEPWMK RKRSKRQRSR SPSSSPPRSR  60
PKSQIQDLAE EEYLALCLLM LANDHHQPKT QPPQESTTKL SHKCSVCGKA FPSYQALGGH  120
KASHRIKPQT TTADDDSTTP TIAVAHPTST AIAPSGKIHE CSICHKVFPT GQALGGHKRC  180
HYEGTIGGGG GSKSVSQSGS VTSTVSEERS NRVFIDLNLP ALPELSLHHH NTVVDEEIQS  240
PLTGKKPLLS TDHDKVIIKK EDFSLRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13845MKRKRSKR
24449KRQRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.62500.0leaf| root| silique
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145771.10.0PREDICTED: zinc finger protein AZF2-like isoform X1
SwissprotQ9SSW21e-100AZF2_ARATH; Zinc finger protein AZF2
TrEMBLM4E0Y90.0M4E0Y9_BRARP; Uncharacterized protein
STRINGBra022436.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.27e-71zinc-finger protein 2